Mouse development ages E18, P2, P5
This page contains companion data for our paper published in Nature Communication ( doi:10.1038/ncomms14219 ):
Transcriptomic and anatomic parcellation of 5-HT3AR expressing cortical interneuron subtypes revealed by single-cell RNA sequencing.Frazer Sarah, Prados Julien, Niquille Mathieu, Cadilhac Christelle, Markopoulos Foivos, Gomez Lucia, Tomasello Ugo, Telley Ludovic, Holtmaat Anthony, Jabaudon Denis, Dayer Alexandre
t-Distributed Stochastic Neighbor Embedding (t-SNE) cluster analysis delineates 3 distinct subtypes of Htr3a-GFP+ INs at P2 and P5 and a E18 cluster. Graph-plot and expression was obtained using the Seurat R package output [Macosko et al. 2015]. Color scale indicates expression level of a given gene.
Violin plots indicating gene expression levels in the 3 main Htr3a-GFP+ interneuron subtypes. Gene expression was obtained using the join posterior estimation from the SCDE R package [Kharchenko et al. 2014].
Graphs showing the temporal dynamics of subtype-enriched transcripts across developmental time-points. Gene expression was obtained using the join posterior estimation from the SCDE R package [Kharchenko et al. 2014].
Fitting details with individual cells and 95% confidence intervals.